KEGG   Viruses: 2193432
Entry
2193432           CDS       T40000                                 
Symbol
gag-pol
Name
(RefSeq) Rous sarcoma virus; Pr180 polyprotein precursor
Virus
11886  Rous sarcoma virus
SSDB
Motif
Pfam: Retro_M RVT_1 RVP rve Gag_p24 Integrase_Zn RVT_thumb RNase_H zf-CCHC IN_DBD_C Gag_p24_C zf-CCHC_4 DDE_3
Other DBs
NCBI-GeneID: 2193432
NCBI-ProteinID: NP_056886
RS: NC_001407
UniProt: P03354
Structure
Position
NC_001407:join(380..2482,2482..5190)
AA seq 1603 aa
MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSDLYSPGSWDPITAALSQ
RAMILGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGGGRVSPPGPECIEKPATER
RIDKGEEVGETTVQRDAKMAPEETATPKTVGTSCYHCGTAIGCNCATASAPPPPYVGSGL
YPSLAGVGEQQGQGGDTPPGAEQSRAEPGHAGQAPGPALTDWARVREELASTGPPVVAMP
VVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTNLMRVIL
GPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQGRGERTNLNRLKGLADGMVGNPQGQA
ALLRPGELVAITASALQAFREVARLAEPAGPWADIMQGPSESFVDFANRLIKAVEGSDLP
PSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAPLTDQGIAAAMS
SAIQPLIMAVVNRERDGQTGSGGRARGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNG
MGHNAKQCRKRDGNQGQRPGKGLSSGPWPGPEPPAVSLAMTMEHKDRPLVRVILTNTGSH
PVKQRSVYITALLDSGADITIISEEDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMIELG
VINRDGSLERPLLLFPAVAMVRGSILGRDCLQGLGLRLTNLIGRATVLTVALHLAIPLKW
KPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLH
DLRAVNAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSV
NNQAPARRFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLCMLHYMDDLLLAASSHD
GLEAAGEEVISTLERAGFTISPDKVQREPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDV
QKLVGSLQWLRPALGIPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVRLSTTAALE
RWDPALPLEGAVARCEQGAIGVLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKL
RASAVRTFGKEVDILLLPACFREDLPLPEGILLALKGFAGKIRSSDTPSIFDIARPLHVS
LKVRVTDHPVPGPTVFTDASSSTHKGVVVWREGPRWEIKEIADLGASVQQLEARAVAMAL
LLWPTTPTNVVTDSAFVAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEV
PGFFTEGNDVADSQATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHC
NSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVA
VQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERAN
RLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTE
GPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDE
ASPLFAGISDWIPWEDEQEGLQGETASNKQERPGEDTLAANES
NT seq 4812 nt   +upstreamnt  +downstreamnt
atggaagccgtcataaaggtgatttcgtccgcgtgtaaaacctattgcgggaaaacctct
ccttctaagaaggaaataggggccatgttgtccctcttacaaaaggaagggttgcttatg
tctccctcagacttatattccccggggtcctgggatcccattaccgcggcgctatcccag
cgggctatgatacttgggaaatcgggagagttaaaaacctggggattggttttgggggca
ttgaaggcggctcgagaggaacaggttacatctgagcaagcaaagttttggttgggatta
gggggagggagggtctctcccccaggtccggagtgcatcgagaaaccagcaacggagcgg
cgaatcgacaaaggggaggaagtgggagaaacaactgtgcagcgagatgcgaagatggcg
ccggaggaaacggccacacctaaaaccgttggcacatcctgctatcattgcggaacagct
attggctgtaattgcgccacagcctcggctcctcctcctccttatgtggggagtggtttg
tatccttccctggcgggggtgggagagcagcagggccaggggggtgacacacctccgggg
gcggaacagtcaagggcggagccagggcatgcgggtcaggctcctgggccggccctgact
gactgggcaagggtcagggaggagcttgcgagtactggtccgcccgtggtggccatgcct
gtagtgattaagacagagggacccgcttggacccctctggagccaaaattgatcacaaga
ctggctgatacggtcaggaccaagggcttacgatccccgattactatggcagaagtggaa
gcgcttatgtcctccccgctgctgccgcatgacgtcacgaatctaatgagagttatttta
gggcctgccccatatgccttatggatggacgcttggggagtccaactccagacagttata
gcggcagccactcgcgacccccgacacccagcgaacggtcaagggcggggggaacggact
aatttgaatcgcttaaagggcttagctgatgggatggtgggcaacccacagggtcaggcc
gcattattaagaccgggggaattggttgctattacggcgtcggctctccaggcgtttaga
gaggttgcccggctggcggaacctgcaggtccatgggcggacatcatgcagggaccatct
gagtcctttgttgattttgccaatcggcttataaaggcggttgaggggtcagatctcccg
ccttccgcgcgggctccggtgatcattgactgctttaggcagaagtcacagccagatatt
cagcagcttatacggacagcaccctccacgctgaccaccccaggagagataattaaatat
gtgctagacaggcagaagactgcccctcttacggatcaaggcatagccgcggccatgtcg
tctgctatccagcccttaattatggcagtagtcaatagagagagggatggacaaactggg
tcgggtggtcgtgcccgagggctctgctacacttgtggatccccgggacattatcaggcg
cagtgcccgaaaaaacggaagtcaggaaacagccgtgagcgatgtcagttgtgtaacggg
atgggacacaacgctaaacagtgtaggaagcgggatggcaaccagggccaacgcccagga
aaaggtctctcttcggggccgtggcccggccctgagccacctgccgtctcgttagcgatg
acaatggaacataaagatcgccccttggttagggtcattctgactaacactgggagtcat
ccggtcaaacagcgttcggtgtatatcaccgcgctgttggactctggagcggacatcact
attatttcagaggaggattggcccaccgattggccagtgatggaggccgcgaacccgcag
atccatgggataggagggggaattcccatgcgaaaatctcgtgacatgatagagttgggg
gttattaaccgagacgggtctttggagcgacccctgctcctcttccccgcagtagctatg
gttagagggagtatcctaggaagagattgtctgcagggcctagggctccgcttgacaaat
ttaatagggagggccactgttctcactgttgcgctacatctggctattccgctcaaatgg
aagccagaccacacgcctgtgtggattgaccagtggcccctccctgaaggtaaacttgta
gcgctaacgcaattagtggaaaaagaattacagttaggacatatagaaccttcacttagt
tgttggaacacacctgtcttcgtgatccggaaggcttccgggtcttaccgcttactgcat
gatttgcgcgctgttaacgccaagcttgttccttttggggccgtccaacagggggcgcca
gttctctccgcgctcccgcgtggctggcccctgatggtcttagacctcaaggattgcttc
ttttctatccctcttgcggaacaagatcgcgaagcttttgcatttacgctcccctctgtg
aataaccaggcccccgctcgaagattccaatggaaggtcttgccccaagggatgacctgt
tctcccactatctgtcagttggtagtgggtcaggtacttgagcccttgcgactcaagcac
ccatctctgtgcatgttgcattatatggatgatcttttgctagccgcctcaagtcacgat
gggttggaagcggcaggggaggaggttatcagtacattggaaagagccgggttcactatt
tcgcctgataaggtccagagggagcccggagtacaatatcttgggtacaagttaggcagt
acgtatgtagcacccgtaggcctggtagcagaacccaggatagccaccttgtgggatgtt
caaaagctggtggggtcacttcagtggcttcgcccagcgttaggaatcccgccacgactg
atgggccccttctatgagcagttacgagggtcagatcctaacgaggcgagggaatggaat
ctagacatgaaaatggcctggagagagatcgtacggcttagcaccactgctgccttggaa
cgatgggaccctgccctgcctctggaaggagcggtcgctagatgtgaacagggggcaata
ggggttttgggacagggactgtccacacacccaaggccatgcttgtggttattctccacc
caacccaccaaggcgtttactgcttggttagaagtgctcacccttttgattactaagcta
cgtgcttcggcagtgcgaacctttggcaaggaggtcgatatcctcctgttgcctgcatgc
tttcgggaggaccttccgctcccagaggggatcctgttagcccttaaggggtttgcagga
aaaatcaggagtagtgacacgccatctatttttgacattgcgcgtccactgcatgtttct
ctgaaagtgagggttaccgaccaccctgtgccgggacccactgtctttactgacgcctcc
tcaagcacccataagggggtggtagtctggagggagggcccaaggtgggagataaaagaa
atagctgatttgggggcaagtgtacaacaactggaagcacgcgctgtggccatggcactt
ctgctgtggccgacaacgcccactaatgtagtgactgactccgcgtttgttgcgaaaatg
ttactcaagatgggacaggagggagtcccgtctacagcggcggcttttattttagaggat
gcgttaagccaaaggtcagccatggccgccgttctccacgtgcggagtcattctgaagtg
ccagggtttttcacagaaggaaatgacgtggcagatagccaagccaccttccaagcgtat
cccttgagagaggctaaagatcttcataccgctctccatattggaccccgcgcgctatcc
aaagcgtgtaatatatctatgcagcaggctagggaggttgttcagacctgcccgcattgt
aattcagcccctgcgttggaggccggagtaaaccctaggggtttgggacccctacagata
tggcagacagactttacgcttgagcctagaatggccccccgttcctggctcgctgttact
gtggataccgcctcatcagcgatagtcgtaactcagcatggccgtgtcacatcggttgct
gtacaacatcattgggccacggctatcgccgttttgggaagaccaaaggccataaaaaca
gataatgggtcctgcttcacgtctaaatccacgcgagagtggctcgcgagatgggggata
gcacacaccaccgggattccgggtaattcccagggtcaagctatggtagagcgggccaac
cggctcctgaaagataggatccgtgtgcttgcggagggggacggctttatgaaaagaatc
cccaccagcaaacagggggaactattagccaaggcaatgtatgccctcaatcactttgag
cgtggtgaaaacacgaaaacaccgatacaaaaacactggagacctaccgttcttacagaa
ggacccccggttaaaatacgaatagagacaggggagtgggaaaaaggatggaacgtgctg
gtctggggacgaggttatgccgctgtgaaaaacagggacactgataaggttatttgggta
ccctctcgaaaagttaaaccggacatcacccaaaaggatgaggtgactaagaaagatgag
gcgagccctctttttgcaggcatttctgactggataccctgggaagacgagcaagaagga
ctccaaggagaaaccgctagcaacaagcaagaaagacccggagaagacacccttgctgcc
aacgagagttaa

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
3D Structure (19)   
   PDB (19)   
Protein domain (13)   
   Pfam (13)   
Taxonomy (1)   
   TAX (1)   
All databases (78)   

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